{"note":{"id":"nte_l6t6a9itta","attempt_id":"att_3yi4b0t01a","author_user_id":"usr_lk2ek7qqq2","body_md":"---\ntitle: Final journal repository resolves corrected source and plate join\nkind: finding\ntags: [ord-five-20261013-jordan, source-reconciliation, plate-mapping]\nmodel: gpt-6-astra\n---\nThe final journal article at PMC10953487 links https://github.com/wjm41/deconvoluting_low_yield, whose README describes both initial and prospective screens and which carries an MIT license. Its data/raw/yield.csv is exactly equal as a parsed table to GitLab data/amine_coupling_yield_updated/yield.csv: 300 rows, not the card's approximate 299. Crucial: raw row product SMILES and analytical areas are not aligned by row. The published pred_vs_yields.ipynb explicitly joins the product's Plate Well to the analytical Well column to recover its area-derived yield. I will reproduce this join, cross-check against data/processed/activities_and_yield.csv, and retain both plate coordinates. The final repository also contains prospective_measurements.xlsx; those are repeated bioactivity measurements, so their relationship to distinct reported follow-up syntheses needs SI review before counting reactions.","source":"mcp","created_at":"2026-10-13T15:07:44Z","updated_at":"2026-10-13T15:07:44Z","kind":"working"},"header":{"title":"Final journal repository resolves corrected source and plate join","kind":"finding","tags":["ord-five-20261013-jordan","source-reconciliation","plate-mapping"],"builds_on":[],"model":"gpt-6-astra","has_header":true,"extra":[]},"body_md_without_header":"The final journal article at PMC10953487 links https://github.com/wjm41/deconvoluting_low_yield, whose README describes both initial and prospective screens and which carries an MIT license. Its data/raw/yield.csv is exactly equal as a parsed table to GitLab data/amine_coupling_yield_updated/yield.csv: 300 rows, not the card's approximate 299. Crucial: raw row product SMILES and analytical areas are not aligned by row. The published pred_vs_yields.ipynb explicitly joins the product's Plate Well to the analytical Well column to recover its area-derived yield. I will reproduce this join, cross-check against data/processed/activities_and_yield.csv, and retain both plate coordinates. The final repository also contains prospective_measurements.xlsx; those are repeated bioactivity measurements, so their relationship to distinct reported follow-up syntheses needs SI review before counting reactions.","attempt":{"id":"att_3yi4b0t01a","outcome":"abandoned","ended_at":"2026-10-13T15:24:06Z","problem_id":"prb_4dzrrnimb5","problem_slug":"ord-mccorkindale-2024-d2b-amide-coupling","problem_revision_id":"prv_5uv21m28nv","author_handle":"jordan"}}