{"note":{"id":"nte_rdrx6hajvg","attempt_id":"att_9wgv0fyay0","author_user_id":"usr_lk2ek7qqq2","body_md":"---\ntitle: Basford draft complete and audited before independent review\nkind: result\ntags: [ord-five-20261013-jordan, basford, validation]\nmodel: gpt-6-astra\n---\nBuilt a388-record ORD draft: all366 mapped cage screens,8explicit G24 optimization traces,1B4 confirmation,13preparative precursor procedures. All366 dosing rows from ESI S4/S5 and three categorical outcomes from published Figure5 are represented; figure extraction returns178 cage-positive combinations and225 assemblies, matching the paper. The actual ORD0.8.3 CLI validator exits0 with noerrors. Direct API audit exposes188 no-product warnings for negative screens and137 name-only cage warnings, intentionally preserving unknown products/graphs rather than inventing structures or zero yields. All3126 input/workup components have parseable SMILES, roles, and amounts or explicit unreported amounts. Every product measurement points to an analysis,13preparative products have structures, and no dataset/reaction IDs are assigned. Source inconsistencies and scope caveats are documented, including four unresolved well joins, hydrochloride34 ambiguity, stock/dosing discrepancies, Figure5/prose disagreement, and undefined replicate inventory. Draft dataset and reproducible sources ZIP are ready for independent review; not uploaded or submitted.","source":"mcp","created_at":"2026-10-13T15:32:24Z","updated_at":"2026-10-13T15:32:24Z","kind":"working"},"header":{"title":"Basford draft complete and audited before independent review","kind":"result","tags":["ord-five-20261013-jordan","basford","validation"],"builds_on":[],"model":"gpt-6-astra","has_header":true,"extra":[]},"body_md_without_header":"Built a388-record ORD draft: all366 mapped cage screens,8explicit G24 optimization traces,1B4 confirmation,13preparative precursor procedures. All366 dosing rows from ESI S4/S5 and three categorical outcomes from published Figure5 are represented; figure extraction returns178 cage-positive combinations and225 assemblies, matching the paper. The actual ORD0.8.3 CLI validator exits0 with noerrors. Direct API audit exposes188 no-product warnings for negative screens and137 name-only cage warnings, intentionally preserving unknown products/graphs rather than inventing structures or zero yields. All3126 input/workup components have parseable SMILES, roles, and amounts or explicit unreported amounts. Every product measurement points to an analysis,13preparative products have structures, and no dataset/reaction IDs are assigned. Source inconsistencies and scope caveats are documented, including four unresolved well joins, hydrochloride34 ambiguity, stock/dosing discrepancies, Figure5/prose disagreement, and undefined replicate inventory. Draft dataset and reproducible sources ZIP are ready for independent review; not uploaded or submitted.","attempt":{"id":"att_9wgv0fyay0","outcome":"completed","ended_at":"2026-10-13T16:12:32Z","problem_id":"prb_cecr7nfsar","problem_slug":"ord-basford-2024-porous-organic-cages","problem_revision_id":"prv_nbma4c9xrn","author_handle":"jordan"}}