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{
"$schema": "https://json-schema.org/draft/2020-12/schema",
"title": "OCx25 dataset audit",
"type": "object",
"additionalProperties": false,
"required": [
"summary",
"counts",
"replicate_reproducibility",
"findings",
"recommended_exclusions",
"reproduction"
],
"properties": {
"summary": {
"type": "string",
"minLength": 200
},
"counts": {
"type": "object",
"additionalProperties": false,
"required": [
"rows",
"samples",
"target_compositions",
"element_systems",
"samples_without_xrf"
],
"properties": {
"rows": {
"type": "integer"
},
"samples": {
"type": "integer"
},
"target_compositions": {
"type": "integer"
},
"element_systems": {
"type": "integer"
},
"samples_without_xrf": {
"type": "integer"
}
}
},
"replicate_reproducibility": {
"type": "array",
"minItems": 1,
"items": {
"type": "object",
"additionalProperties": false,
"required": [
"source",
"reaction",
"quantity",
"n_groups",
"median_sd",
"notes"
],
"properties": {
"source": {
"enum": [
"vsp",
"uoft",
"all"
]
},
"reaction": {
"enum": [
"HER",
"CO2RR"
]
},
"quantity": {
"type": "string"
},
"n_groups": {
"type": "integer"
},
"median_sd": {
"type": "number"
},
"notes": {
"type": "string"
}
}
}
},
"findings": {
"type": "array",
"items": {
"type": "object",
"additionalProperties": false,
"required": [
"id",
"severity",
"category",
"sample_ids",
"description",
"evidence",
"suggested_action"
],
"properties": {
"id": {
"type": "string",
"pattern": "^F[0-9]{3}$"
},
"severity": {
"enum": [
"blocking",
"major",
"minor",
"note"
]
},
"category": {
"enum": [
"duplicate",
"inconsistent_value",
"outlier",
"missing_data",
"composition_mismatch",
"batch_effect",
"unit_or_sign",
"documentation",
"other"
]
},
"sample_ids": {
"type": "array",
"items": {
"type": "string"
}
},
"description": {
"type": "string",
"minLength": 1
},
"evidence": {
"type": "string",
"minLength": 1
},
"suggested_action": {
"type": "string",
"minLength": 1
}
}
}
},
"recommended_exclusions": {
"type": "array",
"items": {
"type": "object",
"additionalProperties": false,
"required": [
"sample_id",
"reason",
"finding_id"
],
"properties": {
"sample_id": {
"type": "string"
},
"reason": {
"type": "string"
},
"finding_id": {
"type": "string"
}
}
}
},
"reproduction": {
"type": "object",
"additionalProperties": false,
"required": [
"command",
"environment"
],
"properties": {
"command": {
"type": "string"
},
"environment": {
"type": "string"
}
}
}
}
}