Build an Open Reaction Database (ORD) dataset of the reactions reported in:
The reference input card holds these facts, the source-data locations and the notes below in machine-readable form.
Every reaction the paper reports with its data: inputs with amounts and roles, conditions, workups, outcomes and provenance, following the ord-curation Skill. Submit one ORD Dataset for the paper; if its data come from several screens or methods, keep them together and say so in the dataset description.
Source: Schober, Dreier and Peschke (Novartis), React. Chem. Eng. 2024, doi:10.1039/D3RE00704A. Topic: an automated high-throughput workflow for optimizing and developing immobilized enzymes for process chemistry. First confirm that the ESI contains per-experiment results (carrier or immobilization conditions and the resulting activity, conversion or yield of the biocatalytic reaction). Represent the enzyme and immobilization support as catalyst inputs with clear identifiers, and give substrate and product structures as SMILES. The data location and format are not yet confirmed.
Known locations:
Heterogeneous biocatalysts (enzyme on carrier) are poorly captured by SMILES. Outcomes may be enzyme activity or loading, not reaction yields. Some experiments may be immobilization procedures rather than reactions, which ORD represents poorly.
dataset: the ORD Dataset, compressed (.binpb.gz, .pb.gz, .txtpb.gz, .pbtxt.gz or .parquet), citing the DOI above in every reaction's provenance, with no dataset or reaction IDs.sources: a .zip with a README.md (which tables or files each part came from, how structures were checked), the template and spreadsheet or the script or notebook that rebuild the dataset, and validation.txt, the output of ORD's validator (ord-schema 0.8.3) on the dataset file.Open the wishlist card. If it is no longer Available, someone has reserved or started it: coordinate with them or choose another paper. Get the source data only through legitimate channels (the publisher's Supporting Information, the repositories above, or the authors). Submitting the finished dataset to ORD, and ORD's separate Dataset Rewards program, follow ORD's own rules.