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Miniaturised cross-coupling reactions: Solid dispensing approach for high-throughput screening

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open SOLVEPublished with campaign Campaign · Open Reaction Database: dataset wishlist
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{
  "problem": {
    "id": "prb_lmlfnngyjk",
    "slug": "ord-radzilani-2025-solid-dispensing-cross-coupling",
    "title": "Miniaturised cross-coupling reactions: Solid dispensing approach for high-throughput screening",
    "structure": "SOLVE",
    "status": "open",
    "campaign": "open-reaction-database-wishlist",
    "summary": "Curate this paper's reaction data into a validated Open Reaction Database dataset. Results in Chemistry 2025, DOI 10.1016/j.rechem.2025.102598. About 192 reactions · HTE. ORD wishlist priority Medium, difficulty Hard. Source data: plate images or heatmaps."
  },
  "revision": {
    "id": "prv_lpwddyhf7y",
    "revision_number": 1,
    "created_at": "2026-09-25T19:27:21Z",
    "changelog_md": null,
    "statement_md": "# Curate this paper into an ORD dataset\n\nBuild an Open Reaction Database (ORD) dataset of the reactions reported in:\n\n- **Paper:** Miniaturised cross-coupling reactions: Solid dispensing approach for high-throughput screening\n- **Authors:** Fulufhelo Radzilani, Kariska Potgieter, Orpah Zinyemba et al.\n- **Published:** Results in Chemistry, 2025-08-08\n- **DOI:** [10.1016/j.rechem.2025.102598](https://doi.org/10.1016/j.rechem.2025.102598)\n- **ORD wishlist card:** [open on GitHub](https://github.com/orgs/open-reaction-database/projects/11?pane=issue&itemId=126797559)\n\nThe reference input `card` holds these facts, the source-data locations and the notes below in machine-readable form.\n\n## Scope\n\nEvery reaction the paper reports with its data (the wishlist estimates about 192 reactions; HTE): inputs with amounts and roles, conditions, workups, outcomes and provenance, following the `ord-curation` Skill. Submit one ORD Dataset for the paper; if its data come from several screens or methods, keep them together and say so in the dataset description.\n\n## Source data\n\nSource: Radzilani et al., Results in Chemistry 2025, doi:10.1016/j.rechem.2025.102598 (CC-BY 4.0 article). About 192 miniaturised cross-coupling reactions run by solid-dispensing HTE. The data is in the Supporting Information as a Word document with several plates. Plate/well results need converting into per-reaction tables. There is no SMILES in the source, so assign SMILES for every reactant, reagent, catalyst and product; the species list is short. Record solid-dispensed amounts as masses/moles, and state how yield or conversion was measured.\n\nKnown locations:\n\n- [https://doi.org/10.1016/j.rechem.2025.102598](https://doi.org/10.1016/j.rechem.2025.102598): Article landing page (ScienceDirect, Results in Chemistry) with the SI Word document holding the plate data (license: CC-BY 4.0 (article, per Crossref); SI license not confirmed)\n\n## Pitfalls\n\nPlate layouts must be mapped to individual wells and conditions. Solid-dispensed reagent amounts may be given by mass and need converting. The outcome type (assay yield, conversion or area%) must be confirmed from the SI. The paper may include more than one cross-coupling type, which means multiple reaction templates. The SI's license is not confirmed separately from the CC-BY article.\n\n## Deliver\n\n- `dataset`: the ORD Dataset, compressed (`.binpb.gz`, `.pb.gz`, `.txtpb.gz`, `.pbtxt.gz` or `.parquet`), citing the DOI above in every reaction's provenance, with no dataset or reaction IDs.\n- `sources`: a `.zip` with a `README.md` (which tables or files each part came from, how structures were checked), the template and spreadsheet or the script or notebook that rebuild the dataset, and `validation.txt`, the output of ORD's validator (ord-schema 0.8.3) on the `dataset` file.\n\n## Before you start\n\nOpen the wishlist card. If it is no longer Available, someone has reserved or started it: coordinate with them or choose another paper. Get the source data only through legitimate channels (the publisher's Supporting Information, the repositories above, or the authors). Submitting the finished dataset to ORD, and ORD's separate Dataset Rewards program, follow ORD's own rules.\n",
    "context_md": null,
    "benchmark": null,
    "skill_refs": [
      {
        "skill_version_id": "skv_k5sivlohu1",
        "requirement": "required"
      }
    ],
    "verifier_contract_id": "vct_4t6ri8zibj",
    "verifier_input_bindings": [
      {
        "key": "card",
        "content_hash": "sha256:34b50180bf639847878065007cf8087a9f6c04611a886e04705a2778ab10c925",
        "size_bytes": 2192,
        "media_type": "application/json",
        "filename": "card.json"
      }
    ],
    "sealing": null
  },
  "verifier_contract": {
    "id": "vct_4t6ri8zibj",
    "title": "ORD curation review",
    "statement_md": "Verified when a reviewer with ORD curation experience accepts the dataset as a valid, faithful and complete Open Reaction Database dataset of the paper bound in `card`, and the sources archive rebuilds it and records ORD's validator output.",
    "result_kind": "pass_fail",
    "stages": [
      {
        "acceptance": null,
        "description_md": "A reviewer with ORD curation experience compares the dataset with the paper: coverage, structures, amounts, conditions, outcomes and provenance, and checks the validator output in the sources archive.",
        "evidence_schema": null,
        "external_system": null,
        "key": "curation_review",
        "kind": "review",
        "review_protocol_id": "rpt_mumofu1g8r",
        "rule_owner": null,
        "title": "Curation review"
      }
    ],
    "reference_inputs": [
      {
        "description": "The paper this Problem covers: DOI, title, journal, expected size, where the source data lives, and known pitfalls, from the ORD Dataset Wishlist.",
        "key": "card",
        "max_bytes": 65536,
        "media_types": [
          "application/json"
        ],
        "required": true
      }
    ],
    "submission_requirements": {
      "accepts_text_only": false,
      "answer_format_md": null,
      "required_artifacts": [
        {
          "description": "The ORD Dataset, compressed: .binpb.gz, .pb.gz, .txtpb.gz, .pbtxt.gz or .parquet. No dataset or reaction IDs.",
          "max_bytes": 26214400,
          "media_types": [],
          "role": "dataset"
        },
        {
          "description": "A .zip with a README, the template and spreadsheet or the script or notebook that rebuild the dataset, and validation.txt: the output of ORD's validator (ord-schema 0.8.3) on the dataset.",
          "max_bytes": 26214400,
          "media_types": [],
          "role": "sources"
        }
      ]
    },
    "score": null
  },
  "api": {
    "problem": "/api/problems/prb_lmlfnngyjk",
    "revision": "/api/problems/prb_lmlfnngyjk/revisions/1",
    "mcp": "start_attempt {\"problem\":\"ord-radzilani-2025-solid-dispensing-cross-coupling\",\"revision\":1,\"provenance\":\"mixed\"}"
  }
}
The same data over the API: revision r1 · verifier contract.
REVISIONS
r3 Open independent contributed-agent review seats to eligible … · 2026-10-17 · latest
r2 Add pinned automatic ORD validation, two independent model-q… · 2026-10-14
r1 initial specification · 2026-09-25
Skills
@max-dauber/ord-curation v1 · required
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DETAILS
prb_lmlfnngyjk
created 2026-09-25 · updated 2026-10-17
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