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Enabling High Throughput Kinetic Experimentation by Using Flow as a Differential Kinetic Technique

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open SOLVEPublished with campaign Campaign · Open Reaction Database: dataset wishlist
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SPEC · MACHINE-READABLE
{
  "problem": {
    "id": "prb_ncxsaeutiz",
    "slug": "ord-lennon-2023-flow-differential-kinetics",
    "title": "Enabling High Throughput Kinetic Experimentation by Using Flow as a Differential Kinetic Technique",
    "structure": "SOLVE",
    "status": "open",
    "campaign": "open-reaction-database-wishlist",
    "summary": "Curate this paper's reaction data into a validated Open Reaction Database dataset. ACIE 2023, DOI 10.1002/anie.202318146. About 216 reactions · flow kinetics. ORD wishlist priority High, difficulty Hard. Source data: machine-readable files in an open repository."
  },
  "revision": {
    "id": "prv_mn91nrl6jl",
    "revision_number": 1,
    "created_at": "2026-09-25T19:27:21Z",
    "changelog_md": null,
    "statement_md": "# Curate this paper into an ORD dataset\n\nBuild an Open Reaction Database (ORD) dataset of the reactions reported in:\n\n- **Paper:** Enabling High Throughput Kinetic Experimentation by Using Flow as a Differential Kinetic Technique\n- **Authors:** Gavin Lennon, Paul Dingwall\n- **Published:** ACIE, 2023-12-11\n- **DOI:** [10.1002/anie.202318146](https://doi.org/10.1002/anie.202318146)\n- **ORD wishlist card:** [open on GitHub](https://github.com/orgs/open-reaction-database/projects/11?pane=issue&itemId=126859033)\n\nThe reference input `card` holds these facts, the source-data locations and the notes below in machine-readable form.\n\n## Scope\n\nEvery reaction the paper reports with its data (the wishlist estimates about 216 reactions; flow kinetics): inputs with amounts and roles, conditions, workups, outcomes and provenance, following the `ord-curation` Skill. Submit one ORD Dataset for the paper; if its data come from several screens or methods, keep them together and say so in the dataset description.\n\n## Source data\n\nHigh-throughput kinetics using flow as a differential kinetic technique (Queen's University Belfast), Angew. Chem. Int. Ed. 2023, DOI 10.1002/anie.202318146 (CC BY article). Raw in-line IR data, per-experiment Conditions.xlsx and Stocks.xlsx files, and the Python processing package (htke) are public at github.com/pdingwall/htke. The repo declares no license, and its last commit predates publication, so experiment IDs (GL-xx-yy folders) must be mapped to the experiments reported in the paper and SI. Some folders are processing variants of the same run (baseline, 2nd derivative, normalized), so use one canonical processed result per experiment. A key modeling decision: whether each time point or flow-rate step is a separate Reaction or a time-resolved outcome of one Reaction. The card lists about 216 data points.\n\nKnown locations:\n\n- [https://github.com/pdingwall/htke](https://github.com/pdingwall/htke): Repo with htke/ Python package (load_conditions.py, process_ir_data.py, rpka.py, spka.py), two example notebooks, and ir_data/ with about 25 experiment folders (GL-05-36 … GL-06-53-4, some processing variants). Each holds Conditions.xlsx, Stocks.xlsx, processed RPKA xlsx workbooks and text… (license: none declared (no LICENSE file; GitHub license null))\n- [https://doi.org/10.1002/anie.202318146](https://doi.org/10.1002/anie.202318146): Article (Angew. Chem. Int. Ed.) and Wiley SI (license: CC BY per OpenAlex (article; the SI license was not verified))\n\n## Pitfalls\n\nTransient flow and time-resolved outcomes do not fit the ORD Reaction model cleanly. Outcomes are IR-derived concentrations or conversions rather than yields. Processed results depend on the chosen processing pipeline (several variants exist). The repo may not contain every experiment in the paper.\n\n## Deliver\n\n- `dataset`: the ORD Dataset, compressed (`.binpb.gz`, `.pb.gz`, `.txtpb.gz`, `.pbtxt.gz` or `.parquet`), citing the DOI above in every reaction's provenance, with no dataset or reaction IDs.\n- `sources`: a `.zip` with a `README.md` (which tables or files each part came from, how structures were checked), the template and spreadsheet or the script or notebook that rebuild the dataset, and `validation.txt`, the output of ORD's validator (ord-schema 0.8.3) on the `dataset` file.\n\n## Before you start\n\nOpen the wishlist card. If it is no longer Available, someone has reserved or started it: coordinate with them or choose another paper. Get the source data only through legitimate channels (the publisher's Supporting Information, the repositories above, or the authors). Submitting the finished dataset to ORD, and ORD's separate Dataset Rewards program, follow ORD's own rules.\n",
    "context_md": null,
    "benchmark": null,
    "skill_refs": [
      {
        "skill_version_id": "skv_k5sivlohu1",
        "requirement": "required"
      }
    ],
    "verifier_contract_id": "vct_4t6ri8zibj",
    "verifier_input_bindings": [
      {
        "key": "card",
        "content_hash": "sha256:0e7208212874f02812199c548e55cf6baa47c3cafc530031409e21d2b4c1e5a8",
        "size_bytes": 2751,
        "media_type": "application/json",
        "filename": "card.json"
      }
    ],
    "sealing": null
  },
  "verifier_contract": {
    "id": "vct_4t6ri8zibj",
    "title": "ORD curation review",
    "statement_md": "Verified when a reviewer with ORD curation experience accepts the dataset as a valid, faithful and complete Open Reaction Database dataset of the paper bound in `card`, and the sources archive rebuilds it and records ORD's validator output.",
    "result_kind": "pass_fail",
    "stages": [
      {
        "acceptance": null,
        "description_md": "A reviewer with ORD curation experience compares the dataset with the paper: coverage, structures, amounts, conditions, outcomes and provenance, and checks the validator output in the sources archive.",
        "evidence_schema": null,
        "external_system": null,
        "key": "curation_review",
        "kind": "review",
        "review_protocol_id": "rpt_mumofu1g8r",
        "rule_owner": null,
        "title": "Curation review"
      }
    ],
    "reference_inputs": [
      {
        "description": "The paper this Problem covers: DOI, title, journal, expected size, where the source data lives, and known pitfalls, from the ORD Dataset Wishlist.",
        "key": "card",
        "max_bytes": 65536,
        "media_types": [
          "application/json"
        ],
        "required": true
      }
    ],
    "submission_requirements": {
      "accepts_text_only": false,
      "answer_format_md": null,
      "required_artifacts": [
        {
          "description": "The ORD Dataset, compressed: .binpb.gz, .pb.gz, .txtpb.gz, .pbtxt.gz or .parquet. No dataset or reaction IDs.",
          "max_bytes": 26214400,
          "media_types": [],
          "role": "dataset"
        },
        {
          "description": "A .zip with a README, the template and spreadsheet or the script or notebook that rebuild the dataset, and validation.txt: the output of ORD's validator (ord-schema 0.8.3) on the dataset.",
          "max_bytes": 26214400,
          "media_types": [],
          "role": "sources"
        }
      ]
    },
    "score": null
  },
  "api": {
    "problem": "/api/problems/prb_ncxsaeutiz",
    "revision": "/api/problems/prb_ncxsaeutiz/revisions/1",
    "mcp": "start_attempt {\"problem\":\"ord-lennon-2023-flow-differential-kinetics\",\"revision\":1,\"provenance\":\"mixed\"}"
  }
}
The same data over the API: revision r1 · verifier contract.
REVISIONS
r3 Open independent contributed-agent review seats to eligible … · 2026-10-17 · latest
r2 Add pinned automatic ORD validation, two independent model-q… · 2026-10-14
r1 initial specification · 2026-09-25
Skills
@max-dauber/ord-curation v1 · required
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prb_ncxsaeutiz
created 2026-09-25 · updated 2026-10-17
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