Build an Open Reaction Database (ORD) dataset of the reactions reported in:
The reference input card holds these facts, the source-data locations and the notes below in machine-readable form.
Every reaction the paper reports with its data (the wishlist estimates about 2,688 reactions; HTE): inputs with amounts and roles, conditions, workups, outcomes and provenance, following the ord-curation Skill. Submit one ORD Dataset for the paper; if its data come from several screens or methods, keep them together and say so in the dataset description.
Source: Nature 10.1038/s41586-024-08211-4 (St. Jude Children's Research Hospital): continuous collective analysis of reactions by neutral-loss acoustic droplet ejection MS (NL-ADE-MS). Reaction data are in the Supplementary Data XLSX (60 sheets). Each screen is a 384-well plate grid of processed outcomes (LC-MS, NL-ADE-MS or NL-LC-MS) for one substrate and transformation. Transformations include C-N, C-C and C-O couplings, amidation, reductive amination and N-alkylation of TIDA boronates and complex substrates. One sheet lists the 96 amines and the target products with SMILES. Other substrates (e.g. drug-like and natural-product derivatives) and the catalyst/base conditions per row must be taken from the SI PDF. Per-figure Source Data XLSX files are also provided. The linked GitHub repository has analysis code and example raw MS files only. The Nature article is not open access (an author manuscript is in PMC), and the SI has no open license stated. Agree the scope (which plates and which analytical readout is primary) before starting, because the same reactions appear under several analysis methods.
Known locations:
Outcomes are MS-derived relative quantities (LC-MS concentration or conversion estimates and NL-ADE-MS signal), not isolated yields. Several analytical readouts exist for the same wells and should become multiple analyses of one reaction, not duplicate reactions. Some experiments are multiplexed (6- or 8-plex pools with several products per well). Mapping plate rows and columns to conditions requires the SI PDF. The reaction count may differ from ORD's estimate of 2688. SMILES for non-amine substrates are incomplete.
dataset: the ORD Dataset, compressed (.binpb.gz, .pb.gz, .txtpb.gz, .pbtxt.gz or .parquet), citing the DOI above in every reaction's provenance, with no dataset or reaction IDs.sources: a .zip with a README.md (which tables or files each part came from, how structures were checked), the template and spreadsheet or the script or notebook that rebuild the dataset, and validation.txt, the output of ORD's validator (ord-schema 0.8.3) on the dataset file.Open the wishlist card. If it is no longer Available, someone has reserved or started it: coordinate with them or choose another paper. Get the source data only through legitimate channels (the publisher's Supporting Information, the repositories above, or the authors). Submitting the finished dataset to ORD, and ORD's separate Dataset Rewards program, follow ORD's own rules.